RetrogeneDB ID: | retro_ggor_222 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 1:20236404..20236874(+) | ||
Located in intron of: | ENSGGOG00000007347 | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000023653 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS14 | ||
Ensembl ID: | ENSGGOG00000024593 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 90.51 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | WRQRAEMAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKA |
WR.RAEMAP.KGKEKKEEQVI.LGPQVAEGENVFGVCH.FASFNDTFVHVTDLSGK.TICRVTGGMKVKA | |
Retrocopy | WRRRAEMAPGKGKEKKEEQVINLGPQVAEGENVFGVCHVFASFNDTFVHVTDLSGKQTICRVTGGMKVKA |
Parental | DRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTP |
DRDESSPYAAML..QDVAQRCKELGI.ALHI.L.ATGGNRTKT.GPGAQSALRALA.SGMKIGRIEDVTP | |
Retrocopy | DRDESSPYAAMLTTQDVAQRCKELGIIALHIELQATGGNRTKTLGPGAQSALRALACSGMKIGRIEDVTP |
Parental | IPSDSTRRK-GGRRGRRL |
IPSDST.RK.GGRRG.RL | |
Retrocopy | IPSDSTLRK<GGRRGHRL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .43 RPM | 190 .33 RPM |
SRP007412_cerebellum | 0 .63 RPM | 150 .38 RPM |
SRP007412_heart | 0 .63 RPM | 137 .62 RPM |
SRP007412_kidney | 1 .68 RPM | 391 .59 RPM |
SRP007412_liver | 2 .00 RPM | 366 .68 RPM |
SRP007412_testis | 2 .28 RPM | 282 .41 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_119 |
Pan troglodytes | retro_ptro_130 |
Pongo abelii | retro_pabe_494 |
Macaca mulatta | retro_mmul_358 |