RetrogeneDB ID: | retro_tsyr_334 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | GeneScaffold_866:148271..148856(-) | ||
Located in intron of: | ENSTSYG00000001802 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHB | ||
Ensembl ID: | ENSTSYG00000013759 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase B [Source:HGNC Symbol;Acc:6541] |
Percent Identity: | 63.59 % |
Parental protein coverage: | 65.98 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRN |
L.DELA.VDV..DKLKGE.MDLQHGS.F..TP.IV..KDY.VTANS..V.VTAGV....GE.RL..VQRN | |
Retrocopy | LSDELAFVDVDKDKLKGEVMDLQHGSPFVKTPNIVSSKDYAVTANSNLVTVTAGVQPRKGETRLVVVQRN |
Parental | VNVFKFIIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLSIHPS |
V..FK..I..I..YSP.C..IVVSN.VDILTYV.WKLS..P..RVIGSGCNLD.A.FR......L.IHP. | |
Retrocopy | VPIFKLMISSITQYSPHCKLIVVSNTVDILTYVSWKLSAFPGNRVIGSGCNLDTAHFRVFIGQRLGIHPE |
Parental | SCHGWILGEHGDSSVAVWSGVNVAGVSL---QELNPEMGTENDSENWKEVHKMVV |
SCHGWILGEH.DSSV.VWSGVN.A...L....EL..E.GT..D......VHK.VV | |
Retrocopy | SCHGWILGEHEDSSVPVWSGVNIAPLTLLAVKELSSEIGTDKDPKQLGKVHKEVV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016175 | 4 retrocopies | |
Canis familiaris | ENSCAFG00000012195 | 9 retrocopies | |
Echinops telfairi | ENSETEG00000019955 | 1 retrocopy | |
Felis catus | ENSFCAG00000012639 | 1 retrocopy | |
Homo sapiens | ENSG00000111716 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000004825 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012155 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002679 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000017786 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000000172 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000004356 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000004762 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000000576 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000008062 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000013759 | 7 retrocopies |
retro_tsyr_1130, retro_tsyr_1532, retro_tsyr_1860, retro_tsyr_2051, retro_tsyr_334 , retro_tsyr_64, retro_tsyr_986,
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