RetrogeneDB ID: | retro_tsyr_1130 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_31645:1772..2283(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHB | ||
Ensembl ID: | ENSTSYG00000013759 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase B [Source:HGNC Symbol;Acc:6541] |
Percent Identity: | 81.5 % |
Parental protein coverage: | 58.76 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | QHGSLFLQTPKIVADKDYSV-TANSKIVVVTAGVRQQEGE-SRLNLVQRNVNVFKFIIPQIVKYSPDCII |
QH..LF.QTPKIV.DKDYS..TA.SKIVVVTAGVRQQEGE.SR.NLVQRNVNV.KFIIPQIVK.SPD..I | |
Retrocopy | QHRCLFIQTPKIVTDKDYSG<TASSKIVVVTAGVRQQEGE<SRFNLVQRNVNVSKFIIPQIVKCSPDGLI |
Parental | IVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLSIHPSSCHGWILGEHGDSSVAVWSG |
IVVSNPVDILTYVTWKLSGLPKHRVI.SG..LDSARF.YL.AEKL.IH.S.CHG..L.EHGDSSVAV.SG | |
Retrocopy | IVVSNPVDILTYVTWKLSGLPKHRVIRSGGTLDSARFCYLLAEKLGIHSSCCHG*VLREHGDSSVAVLSG |
Parental | VNVAGVSLQELNPEMGTENDSENWKEVHKMVVE |
VN.AG.S.Q..NPEMGT.NDSENWKEVHKMV.E | |
Retrocopy | VNMAGISFQASNPEMGTDNDSENWKEVHKMVGE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016175 | 4 retrocopies | |
Canis familiaris | ENSCAFG00000012195 | 9 retrocopies | |
Echinops telfairi | ENSETEG00000019955 | 1 retrocopy | |
Felis catus | ENSFCAG00000012639 | 1 retrocopy | |
Homo sapiens | ENSG00000111716 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000004825 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012155 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002679 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000017786 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000000172 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000004356 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000004762 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000000576 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000008062 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000013759 | 7 retrocopies |
retro_tsyr_1130 , retro_tsyr_1532, retro_tsyr_1860, retro_tsyr_2051, retro_tsyr_334, retro_tsyr_64, retro_tsyr_986,
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