RetrogeneDB ID: | retro_tsyr_986 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_2635:11142..11721(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHB | ||
Ensembl ID: | ENSTSYG00000013759 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase B [Source:HGNC Symbol;Acc:6541] |
Percent Identity: | 76.68 % |
Parental protein coverage: | 66.32 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | LADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRN |
LADELALVDV..DKLKGEMMDLQHGSLFL.TPKIV..KDY.VTANSK.V..TAG.RQQEGESRLNLVQRN | |
Retrocopy | LADELALVDVMADKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRN |
Parental | VNVFKFIIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLSIHPS |
VN.FKFI.P..VKYSP.....VVSNPVDILTYV.WK.S..PK.RVIGSG.NLDSARFRYLM.E....HP. | |
Retrocopy | VNIFKFIFPNVVKYSPNWKLLVVSNPVDILTYVAWKISDFPKNRVIGSG*NLDSARFRYLMGERVGVHPL |
Parental | SCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTENDSENWKEVHKMVVE |
SCHGW.LGEHGDSSV.VWS.VNVAGVSL..L.P..GT..D.E..KEVHK.VVE | |
Retrocopy | SCHGWVLGEHGDSSVPVWSRVNVAGVSLKNLHPDLGTVADKEQ*KEVHKQVVE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016175 | 4 retrocopies | |
Canis familiaris | ENSCAFG00000012195 | 9 retrocopies | |
Echinops telfairi | ENSETEG00000019955 | 1 retrocopy | |
Felis catus | ENSFCAG00000012639 | 1 retrocopy | |
Homo sapiens | ENSG00000111716 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000004825 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012155 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002679 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000017786 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000000172 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000004356 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000004762 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000000576 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000008062 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000013759 | 7 retrocopies |
retro_tsyr_1130, retro_tsyr_1532, retro_tsyr_1860, retro_tsyr_2051, retro_tsyr_334, retro_tsyr_64, retro_tsyr_986 ,
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