RetrogeneDB ID: | retro_pcap_204 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_159392:676..1111(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26L1 | ||
Ensembl ID: | ENSPCAG00000002246 | ||
Aliases: | None | ||
Description: | ribosomal protein L26-like 1 [Source:HGNC Symbol;Acc:17050] |
Percent Identity: | 90.34 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV |
.KFNPFVTSDRSKNRKRHFNA.SH.RRK..SSPLSKE.RQKYNVRSMPIRKDDEVQVVRGHYK.QQIGKV | |
Retrocopy | VKFNPFVTSDRSKNRKRHFNATSHIRRKVTSSPLSKEVRQKYNVRSMPIRKDDEVQVVRGHYKDQQIGKV |
Parental | VQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEELI |
VQVYRKKYVIYIERVQ..KANGTTVHVGIHPSKVVITRLKLDK.RKK.LERKAKS.QVGKEKGKYKEE.I | |
Retrocopy | VQVYRKKYVIYIERVQQDKANGTTVHVGIHPSKVVITRLKLDKNRKKTLERKAKSHQVGKEKGKYKEEII |
Parental | EKMQE |
.KMQE | |
Retrocopy | KKMQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |