Parental gene:

RPL26L1, ENSSSCG00000016989

Aliases:None
Description:ribosomal protein L26-like 1 [Source:HGNC Symbol;Acc:17050]
Organism:Pig (Sus scrofa)
Coordinates:16:55580785..55590313(-)


>ENSSSCG00000016989
ATGAAGTTCAACCCCTTCGTGACTTCGGACCGCAGCAAAAACCGCAAACGTCATTTCAATGCCCCCTCCCACGTGCGCAG
GAAGATCATGTCGTCTCCACTCTCCAAGGAGCTGCGGCAGAAGTACAACGTTCGCTCCATGCCCATCCGCAAGGACGACG
AGGTCCAGGTGGTCCGAGGACATTACAAAGGTCAGCAAATTGGCAAAGTAGTCCAGGTGTACAGAAAGAAATATGTCATC
TACATCGAGCGGGTGCAGCGGGAGAAGGCTAATGGTACGACTGTCCACGTGGGCATTCACCCGAGCAAGGTAGTTATCAC
CAGGCTAAAACTGGACAAAGATCGGAAAAAAATTCTTGAGCGCAAAGCCAAATCTCGACAAGTTGGAAAAGAGAAAGGCA
AATATAAGGAAGAACTTATTGAGAAAATGCAGGAGTGA

Library Parental gene expression (RPM)
SRP014902_placenta 22 .56 RPM
SRP014902_testis 34 .51 RPM
SRP018856_adipose 37 .28 RPM
SRP018288_kidney 37 .92 RPM
SRP018288_lung 19 .55 RPM
SRP018288_liver 25 .27 RPM
SRP018288_heart 13 .57 RPM
SRP035408_liver 23 .37 RPM
SRP035408_brain 53 .36 RPM



Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000002289 ortholog_one2one 35 retrogenes
retro_dnov_1106, retro_dnov_1147, retro_dnov_1171, retro_dnov_1258, retro_dnov_1304, retro_dnov_1319, retro_dnov_1344, retro_dnov_1381, retro_dnov_1501, retro_dnov_1676, retro_dnov_1819, retro_dnov_1959, retro_dnov_2039, retro_dnov_2041, retro_dnov_2061, retro_dnov_2078, retro_dnov_2103, retro_dnov_2116, retro_dnov_2121, retro_dnov_2287, retro_dnov_2297, retro_dnov_2438, retro_dnov_2545, retro_dnov_2580, retro_dnov_2632, retro_dnov_300, retro_dnov_306, retro_dnov_467, retro_dnov_646, retro_dnov_666, retro_dnov_681, retro_dnov_760, retro_dnov_850, retro_dnov_970, retro_dnov_985,
Felis catus ENSFCAG00000026949 ortholog_one2one 1 retrogene
retro_fcat_524,
Homo sapiens ENSG00000037241 ortholog_one2one 2 retrogenes
retro_hsap_586, retro_hsap_837,
Latimeria chalumnae ENSLACG00000007599 ortholog_one2many 2 retrogenes
retro_lcha_5, retro_lcha_8,
Microcebus murinus ENSMICG00000011312 ortholog_one2one 10 retrogenes
retro_mmur_1020, retro_mmur_1144, retro_mmur_313, retro_mmur_327, retro_mmur_346, retro_mmur_412, retro_mmur_471, retro_mmur_623, retro_mmur_72, retro_mmur_75,
Macaca mulatta ENSMMUG00000003070 ortholog_one2one 1 retrogene
retro_mmul_676,
Oryctolagus cuniculus ENSOCUG00000006172 ortholog_one2one 4 retrogenes
retro_ocun_1015, retro_ocun_1224, retro_ocun_354, retro_ocun_845,
Procavia capensis ENSPCAG00000002246 ortholog_one2one 10 retrogenes
retro_pcap_137, retro_pcap_157, retro_pcap_188, retro_pcap_204, retro_pcap_337, retro_pcap_404, retro_pcap_419, retro_pcap_42, retro_pcap_422, retro_pcap_448,
Pteropus vampyrus ENSPVAG00000003253 ortholog_one2one 8 retrogenes
retro_pvam_1062, retro_pvam_1208, retro_pvam_122, retro_pvam_353, retro_pvam_688, retro_pvam_71, retro_pvam_769, retro_pvam_877,
Sus scrofa ENSSSCG00000028850 within_species_paralog 9 retrogenes
retro_sscr_261, retro_sscr_363, retro_sscr_426, retro_sscr_427, retro_sscr_471, retro_sscr_485, retro_sscr_508, retro_sscr_609, retro_sscr_736,
Ictidomys tridecemlineatus ENSSTOG00000026876 ortholog_one2one 1 retrogene
retro_itri_1141,
Tursiops truncatus ENSTTRG00000010624 ortholog_one2one 8 retrogenes
retro_ttru_1070, retro_ttru_1124, retro_ttru_1694, retro_ttru_1818, retro_ttru_364, retro_ttru_386, retro_ttru_474, retro_ttru_646,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_462 73.60 84.83
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2. retro_sscr_685 63.64 82.07
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3. retro_sscr_1104 71.68 77.93
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Download FASTA sequences of all ENSSSCG00000016989 retrocopies