RetrogeneDB ID: | retro_pvam_1208 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_4212:28850..29283(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26L1 | ||
Ensembl ID: | ENSPVAG00000003253 | ||
Aliases: | None | ||
Description: | ribosomal protein L26-like 1 [Source:HGNC Symbol;Acc:17050] |
Percent Identity: | 67.35 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MKFNPF-VTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIR-KDDEVQVVRGHYKGQQIG |
MKFNPF..T.D.SKNR..H.N...H.R.KI.S..LSKELR.KYN....PI..KDD.VQV..GHY.GQQI. | |
Retrocopy | MKFNPF<LT*DCSKNRNHHDNDSLHMRKKITSAWLSKELRRKYNECFVPIA<KDDKVQVIWGHYEGQQID |
Parental | KVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEE |
.VVQVYRKK..I.I....REK.N.TT.HVGI.PSKVV.TRLKLDK..K.ILE.KAKS.QVGKEK.KYKE. | |
Retrocopy | TVVQVYRKKAIISIKWAPREKPNSTTAHVGIYPSKVVSTRLKLDKEWKNILEHKAKS*QVGKEKNKYKED |
Parental | LIEKMQE |
LIEKMQ. | |
Retrocopy | LIEKMQD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |