RetrogeneDB ID: | retro_pvam_688 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | GeneScaffold_703:50722..51156(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26L1 | ||
Ensembl ID: | ENSPVAG00000003253 | ||
Aliases: | None | ||
Description: | ribosomal protein L26-like 1 [Source:HGNC Symbol;Acc:17050] |
Percent Identity: | 67.81 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV |
.KF..FVT.D..K..KRHF..PSH..RKIMSSPLSKELRQKY.V.SMPI..D.EVQ.VRGH.KGQQ.GK. | |
Retrocopy | VKFGSFVTPDWNKVCKRHFDVPSHILRKIMSSPLSKELRQKYSVQSMPI*EDGEVQTVRGHRKGQQPGKL |
Parental | VQVYRK-KYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEEL |
.QV.R..KYV...E.VQREKA.GTTV.VG..PSKV.I.R.KLDKDRK..L.RKAKS.Q..KEK.KYKE.. | |
Retrocopy | LQVCRR<KYVLCTE*VQREKAGGTTVRVGTRPSKVLIARPKLDKDRKEALGRKAKSHQPVKEKSKYKEDA |
Parental | IEKMQE |
.EKM.E | |
Retrocopy | MEKMWE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |