RetrogeneDB ID: | retro_itri_1141 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393384.1:1929639..1930069(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26L1 | ||
Ensembl ID: | ENSSTOG00000026876 | ||
Aliases: | None | ||
Description: | ribosomal protein L26-like 1 [Source:HGNC Symbol;Acc:17050] |
Percent Identity: | 53.74 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSS-PLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGK |
M.F.PF.T...SK........PSH..RK...S...S.EL.Q..NV.SMPI.KD...Q.V.GHYKG.QIGK | |
Retrocopy | MQFSPFFTLVHSKHLSVTSKPPSHMHRKTQWS<QFSRELWQQHNVCSMPISKDHKDQ*VGGHYKGHQIGK |
Parental | VVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQ-VGKEKGKYKEE |
...VYRK.YVI....VQ.E...G...H..IHPSKVVITR.K..KD..KILE.KAK..Q.VGK.KG.YK.E | |
Retrocopy | FIHVYRKQYVIHMVQVQCE-SSGMNSHMYIHPSKVVITRVKWYKD*EKILEGKAKAQQ<VGKKKGPYKKE |
Parental | LIEKMQE |
...K..E | |
Retrocopy | FTKKL*E |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |