RetrogeneDB ID: | retro_pcap_42 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | GeneScaffold_205:42535..42879(-) | ||
Located in intron of: | ENSPCAG00000009005 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26L1 | ||
Ensembl ID: | ENSPCAG00000002246 | ||
Aliases: | None | ||
Description: | ribosomal protein L26-like 1 [Source:HGNC Symbol;Acc:17050] |
Percent Identity: | 82.76 % |
Parental protein coverage: | 79.31 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANG-TTVHVGI |
S.PLS.ELR.KY...SMPIRKDDEVQVV.GHYKGQQIG.VVQVYRKKYVIYI..VQREKAN..TTVHVGI | |
Retrocopy | SFPLSQELREKYSIQSMPIRKDDEVQVV*GHYKGQQIGQVVQVYRKKYVIYIKHVQREKANA<TTVHVGI |
Parental | HPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEELIEKMQE |
HPSKV..TRLKLDKD.KK.LE.KAKSRQVGKEKGKYKEE..E.MQE | |
Retrocopy | HPSKVAMTRLKLDKDHKKTLECKAKSRQVGKEKGKYKEETVETMQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |