RetrogeneDB ID: | retro_ocun_845 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 15:81512646..81513072(-) | ||
Located in intron of: | ENSOCUG00000005417 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26L1 | ||
Ensembl ID: | ENSOCUG00000006172 | ||
Aliases: | None | ||
Description: | ribosomal protein L26-like 1 [Source:HGNC Symbol;Acc:17050] |
Percent Identity: | 64.14 % |
Parental protein coverage: | 72.86 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV |
MKF..FVTSDR.KN...HFNA.SH.RRKI..SPLSKELR.K....SMPI.KDDEVQ......K.....KV | |
Retrocopy | MKFSQFVTSDRRKNQNQHFNASSHGRRKIVLSPLSKELRLKVSLPSMPICKDDEVQWCENIVKVRNC-KV |
Parental | VQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEELI |
.QVY..KYVI..E..Q.EKANGTTV....HPSK.V.TRLK.D.D.K.IL..KAKS..VGKEKGKYKEE.. | |
Retrocopy | DQVYKNKYVIHTE*MQQEKANGTTVLA--HPSKLVVTRLKQDRDHKMILA*KAKSCHVGKEKGKYKEEAT |
Parental | EKMQE |
EK.QE | |
Retrocopy | EKIQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 16 .56 RPM |
SRP017611_kidney | 0 .00 RPM | 24 .73 RPM |
SRP017611_liver | 0 .00 RPM | 7 .55 RPM |