RetrogeneDB ID: | retro_mmul_676 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1099214323025:1126..1460(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26L1 | ||
Ensembl ID: | ENSMMUG00000003070 | ||
Aliases: | None | ||
Description: | ribosomal protein L26-like 1 [Source:RefSeq peptide;Acc:NP_001253942] |
Percent Identity: | 66.07 % |
Parental protein coverage: | 76.55 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREK-ANGTTVHVGIHPSK |
SKEL.QK..V.S.PI.KD...QVV..H.KG.QI.K.VQ.Y..KY.IY.E.VQ.EK.ANGT.V.VGI.PS. | |
Retrocopy | SKELQQKHSVHSTPIHKDKKIQVVGRHCKG*QISKLVQMYIRKYIIYMEQVQCEK>ANGTAVYVGICPSQ |
Parental | VVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEELIEKMQE |
VVITRLKLD....K.LE.KA.S.QV.K.KGKYKEEL.EKMQE | |
Retrocopy | VVITRLKLDQKWEKVLECKAESQQVRKGKGKYKEELTEKMQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 20 .39 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 27 .84 RPM |
SRP007412_cerebellum | 0 .00 RPM | 17 .37 RPM |
SRP007412_heart | 0 .00 RPM | 17 .49 RPM |
SRP007412_kidney | 0 .00 RPM | 19 .48 RPM |
SRP007412_liver | 0 .00 RPM | 22 .48 RPM |
SRP007412_testis | 0 .00 RPM | 80 .70 RPM |