RetrogeneDB ID: | retro_pcap_338 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_41649:13806..14300(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A1 | ||
Ensembl ID: | ENSPCAG00000001271 | ||
Aliases: | None | ||
Description: | protein tyrosine phosphatase type IVA, member 1 [Source:HGNC Symbol;Acc:9634] |
Percent Identity: | 67.47 % |
Parental protein coverage: | 95.91 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | PAAVQCNSTRFLTNHYSTNMNLNKFIE-LKKYGVTTIVRVCEATYDTALVEKEGIHVLDWPFDDGAPPSN |
P.......T.FL..H..TN..LNKFIE..KKY..TTIV..CE.TYD.A.VEKEGIHV.D.PFDDG..P.. | |
Retrocopy | PSFCAYKNT*FLNTHNPTNTTLNKFIEETKKYRTTTIVGICEPTYDIAFVEKEGIHVVDGPFDDGVLPPT |
Parental | QIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGMKYEDAVQFIRQKRRGAFNSK-QLL |
QIVDDWLSLVKIKF.E..GCCIAVHCVAGLGRA..L..LAL..GGMKYEDA.QFIR.K.R.AFNSK.... | |
Retrocopy | QIVDDWLSLVKIKFCEKLGCCIAVHCVAGLGRASGLGSLALTKGGMKYEDAIQFIRSK*REAFNSK<EIS |
Parental | YLEKYRPKMRLRFKESNGHRNNCCIQ |
YLE....KM.L.FKES.GHRNNC.IQ | |
Retrocopy | YLETHHSKMWLCFKESSGHRNNCYIQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000018507 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000008183 | 6 retrocopies | |
Latimeria chalumnae | ENSLACG00000007183 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001162 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002777 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000018701 | 5 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006311 | 4 retrocopies | |
Procavia capensis | ENSPCAG00000001271 | 8 retrocopies |
retro_pcap_183, retro_pcap_249, retro_pcap_291, retro_pcap_338 , retro_pcap_367, retro_pcap_425, retro_pcap_431, retro_pcap_76,
|
Rattus norvegicus | ENSRNOG00000011771 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000046370 | 4 retrocopies | |
Tupaia belangeri | ENSTBEG00000009956 | 14 retrocopies | |
Tursiops truncatus | ENSTTRG00000004129 | 6 retrocopies |