RetrogeneDB ID: | retro_rnor_612 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 1:160363932..160364202(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RGD1566035 | ||
Ensembl ID: | ENSRNOG00000046370 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 52.75 % |
Parental protein coverage: | 52.6 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | NQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGMKYEDAVQFIRQKRRGAFNSKQLL |
N...DDWLSL...K.REEPGCCIA..C.AG.GRAPVLVALAL.....K.E....F..Q.RR.A..S.... | |
Retrocopy | NTVHDDWLSLENMKLREEPGCCIALRCAAGPGRAPVLVALALTVSAVKNEEELRFTGQ-RRAAELSIANN |
Parental | YLEKYRPKMRLRFKDSNGHRN |
.LEK.....RL.F..SNG... | |
Retrocopy | FLEKQCSEVRLLFRVSNGKKH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .22 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .07 RPM | 0 .00 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |