RetrogeneDB ID: | retro_mdom_1630 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 6:261128704..261128989(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A1 | ||
Ensembl ID: | ENSMODG00000018701 | ||
Aliases: | None | ||
Description: | protein tyrosine phosphatase type IVA, member 1 [Source:HGNC Symbol;Acc:9634] |
Percent Identity: | 76.04 % |
Parental protein coverage: | 55.49 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | NQIVDDWLNLVKTKYREEPGGCIAVHCVAGLGRAPVLVALALIEGGMKYEDAVQFIRQKRRGAFNSKQLL |
.QIVD.WLNL.KT.Y.E.PGG..AVHC.A.LGRA.VLVAL.LI.GGM..EDA.QFIRQKRRGAF.SKQL. | |
Retrocopy | HQIVD-WLNLLKTEY*EKPGGGVAVHCIARLGRASVLVALTLIKGGMT*EDAMQFIRQKRRGAFKSKQLP |
Parental | YLEKYRPKMRLRFKDSNGHRNTCSIQ |
YLEKY.PKM.L.F.DSNGHRNTC.IQ | |
Retrocopy | YLEKYLPKMQLCFRDSNGHRNTCNIQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |