RetrogeneDB ID: | retro_pcap_367 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_5137:19800..20182(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A1 | ||
Ensembl ID: | ENSPCAG00000001271 | ||
Aliases: | None | ||
Description: | protein tyrosine phosphatase type IVA, member 1 [Source:HGNC Symbol;Acc:9634] |
Percent Identity: | 70.77 % |
Parental protein coverage: | 74.27 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | STNMNLNKFI-ELKKYGVTTIVRVCEATYDTALVEKEGIHVLDWPFDDGAPPSNQIVDDWLSLVKIKFRE |
S.N...N.F..ELKK.GVTTI.RVCEATY...L.EKEGI.VLDWP..DG.PPS.QIVD.WL.LV....RE | |
Retrocopy | SANASFNRFFQELKKNGVTTIIRVCEATYSMTLLEKEGIQVLDWPYEDGTPPSSQIVDKWLNLVRTTLRE |
Parental | EPGCCIAV-HCVAGLGR-APVLVALALIEGGMKYEDAVQFIRQKRRGAFNSKQLLYLEKY |
.PG.CIAV.H.VA.LGR..PVLVA.ALIEGGMK.E.AVQFIRQK..GAFN.K.LLYLEKY | |
Retrocopy | NPGSCIAV<HYVADLGR<TPVLVARALIEGGMKHEGAVQFIRQK*WGAFNNKELLYLEKY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000018507 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000008183 | 6 retrocopies | |
Latimeria chalumnae | ENSLACG00000007183 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001162 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002777 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000018701 | 5 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006311 | 4 retrocopies | |
Procavia capensis | ENSPCAG00000001271 | 8 retrocopies |
retro_pcap_183, retro_pcap_249, retro_pcap_291, retro_pcap_338, retro_pcap_367 , retro_pcap_425, retro_pcap_431, retro_pcap_76,
|
Rattus norvegicus | ENSRNOG00000011771 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000046370 | 4 retrocopies | |
Tupaia belangeri | ENSTBEG00000009956 | 14 retrocopies | |
Tursiops truncatus | ENSTTRG00000004129 | 6 retrocopies |