RetrogeneDB ID: | retro_mdom_1864 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 8:139984577..139984887(+) | ||
Located in intron of: | ENSMODG00000016956 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A1 | ||
Ensembl ID: | ENSMODG00000018701 | ||
Aliases: | None | ||
Description: | protein tyrosine phosphatase type IVA, member 1 [Source:HGNC Symbol;Acc:9634] |
Percent Identity: | 80.77 % |
Parental protein coverage: | 59.54 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LKKYGVTTVVRVCEATYDTALVEKEGIQVLDWPFDDGAPPSNQIVDDWLNLVK-TKYREEPGGCIAVHCV |
L.KYGV.TVVR.CEATYD.ALVEKE.IQ..DWP.DDGAPP.N.IVDDWLNLVK.TK..EEP.GCIAVHCV | |
Retrocopy | LEKYGVSTVVRTCEATYDIALVEKEDIQAPDWPLDDGAPPPNHIVDDWLNLVK>TKFCEEPVGCIAVHCV |
Parental | AGLGRAPVLVALALIEGGMKYEDAVQFIRQKRRG |
AG.GRA.VLVALALIEGGMK.EDA.QF.RQKR.G | |
Retrocopy | AGFGRAAVLVALALIEGGMK*EDAAQFMRQKRHG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |