RetrogeneDB ID: | retro_dnov_1850 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_33218:7344..7825(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A1 | ||
Ensembl ID: | ENSDNOG00000018507 | ||
Aliases: | None | ||
Description: | protein tyrosine phosphatase type IVA, member 1 [Source:HGNC Symbol;Acc:9634] |
Percent Identity: | 59.51 % |
Parental protein coverage: | 94.08 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | EVTYKNMRFLITHNPTNATLSKFIEELKKYGVTTIVRVCEATYDTALVEKEGIRVLDWPFDDGAPPSNQI |
EV.YKNMRFLITHNPT..T.SKF.EEL.KYGV.T..R..EATY.TALVE..GI..LDWPFD.GA..SN.I | |
Retrocopy | EVAYKNMRFLITHNPTSTTISKFLEELEKYGVNTKGREFEATYSTALVEQIGIHDLDWPFDGGAQLSNLI |
Parental | VDDWLSLVKIKFREEPGCCIAVHCVAGLGRAQVLVLASVEGGMQ-ED-AIQFIRQKWHGAFNSKHILYLE |
VDD.L.L.KIK..EE........C......A.V..LA..EG.M..ED...QFIRQK.HGAFNSK..LYL. | |
Retrocopy | VDDRLRLIKIKL*EEVVLHCCSLCCRSWESASVYALALTEGRMK*ED<SEQFIRQKQHGAFNSKQLLYLD |
Parental | KC-HPKMHLHFKD-KGPENNCCI |
....P...LHFKD..G...NCCI | |
Retrocopy | SI<CPIIQLHFKDSNGHRSNCCI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 17 .89 RPM |
SRP012922_cerebellum | 0 .00 RPM | 12 .23 RPM |
SRP012922_heart | 0 .00 RPM | 18 .56 RPM |
SRP012922_kidney | 0 .00 RPM | 13 .14 RPM |
SRP012922_liver | 0 .00 RPM | 46 .44 RPM |
SRP012922_lung | 0 .00 RPM | 14 .97 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 106 .45 RPM |
SRP012922_spleen | 0 .00 RPM | 14 .31 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000018507 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000008183 | 6 retrocopies | |
Latimeria chalumnae | ENSLACG00000007183 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000006572 | 8 retrocopies | |
Myotis lucifugus | ENSMLUG00000001162 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002777 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000018701 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000440 | 6 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006311 | 4 retrocopies | |
Ochotona princeps | ENSOPRG00000004938 | 4 retrocopies | |
Procavia capensis | ENSPCAG00000001271 | 8 retrocopies | |
Pongo abelii | ENSPPYG00000016743 | 5 retrocopies | |
Rattus norvegicus | ENSRNOG00000011771 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000046370 | 4 retrocopies | |
Tupaia belangeri | ENSTBEG00000009956 | 14 retrocopies | |
Tursiops truncatus | ENSTTRG00000004129 | 6 retrocopies | |
Vicugna pacos | ENSVPAG00000004277 | 9 retrocopies |