RetrogeneDB ID: | retro_etel_1485 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_273469:15065..15393(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A1 | ||
Ensembl ID: | ENSETEG00000008183 | ||
Aliases: | None | ||
Description: | protein tyrosine phosphatase type IVA, member 1 [Source:HGNC Symbol;Acc:9634] |
Percent Identity: | 73.95 % |
Parental protein coverage: | 67.63 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | ITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTALVE-KEGIHVLDWPFDDGAPPSNQIVDDWLSLV- |
I.HNPTNATLNK..EEL..YGVT....VCEATYDTALV...EG.HVLDWPFDDG.PP.NQ.V.DW.SL.. | |
Retrocopy | IAHNPTNATLNKCAEELMEYGVT----VCEATYDTALVG<NEGMHVLDWPFDDGVPPCNQMVEDWFSLI< |
Parental | KIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGMKYEDAVQFIRQKR |
KIKF..EPG.CIAVHCVAGLGR.PVL.AL...EGG..YEDA.QFIRQKR | |
Retrocopy | KIKFCKEPGGCIAVHCVAGLGRTPVLFAL---EGGVRYEDAAQFIRQKR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |