RetrogeneDB ID: | retro_pcap_183 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_14124:32092..32581(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A1 | ||
Ensembl ID: | ENSPCAG00000001271 | ||
Aliases: | None | ||
Description: | protein tyrosine phosphatase type IVA, member 1 [Source:HGNC Symbol;Acc:9634] |
Percent Identity: | 56.73 % |
Parental protein coverage: | 98.25 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | VNCPAPAAVQCNSTRFLTNHYSTNMNLNKFIE-LKKYGVTTIVRVCEATYDTALVEKEGIHVLDWPFDDG |
.NCP.P..V...S...L.....TN..LNKFI..LKKY.VTT...VCEA.Y..A.V.KEGI.VLDWPF.D. | |
Retrocopy | MNCPPPVEVTYKSW*LLITRCPTNATLNKFIDKLKKYRVTT---VCEAPYSIAFVDKEGIRVLDWPF-DD |
Parental | APP-SNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGMKYEDAVQFIRQKRRGAFN |
..P...QIV.DWL.LVKIKF.EEPGCCIAVHCV...G.A..L...AL.EG..KYED..Q..RQK..G.FN | |
Retrocopy | DVP<TSQIVEDWLTLVKIKFCEEPGCCIAVHCVTHPGSASGLSTRALTEGTVKYEDILQLTRQKWHGVFN |
Parental | -SKQLLYLEKYRPKMRLRFKESNGHRNNCCI |
....L.......PKM.L.FKESNG.RN.C.I | |
Retrocopy | >ARNLIF--GHHPKMWLCFKESNGPRNTCHI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000018507 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000008183 | 6 retrocopies | |
Latimeria chalumnae | ENSLACG00000007183 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001162 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002777 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000018701 | 5 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006311 | 4 retrocopies | |
Procavia capensis | ENSPCAG00000001271 | 8 retrocopies |
retro_pcap_183 , retro_pcap_249, retro_pcap_291, retro_pcap_338, retro_pcap_367, retro_pcap_425, retro_pcap_431, retro_pcap_76,
|
Rattus norvegicus | ENSRNOG00000011771 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000046370 | 4 retrocopies | |
Tupaia belangeri | ENSTBEG00000009956 | 14 retrocopies | |
Tursiops truncatus | ENSTTRG00000004129 | 6 retrocopies |