RetrogeneDB ID: | retro_rnor_2349 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 6:33361703..33362081(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RGD1566035 | ||
Ensembl ID: | ENSRNOG00000046370 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.1 % |
Parental protein coverage: | 73.41 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MARMNRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPF |
MA.MN.PAPVEVTYKNMRFL.THNPTNATL.KF.EELKK..VTTIVR.CEA.Y.TT.VE.E.I.VLDWPF | |
Retrocopy | MA*MNCPAPVEVTYKNMRFLTTHNPTNATLDKFTEELKKCRVTTIVRICEAMYGTTPVERESICVLDWPF |
Parental | DDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGMKYE |
DDGA.PSNQIVDDWLSLVKI.FR.E.GCC.AVHCVAGLGRAPVLVA.AL.E..MKY. | |
Retrocopy | DDGA-PSNQIVDDWLSLVKITFRDEAGCCNAVHCVAGLGRAPVLVAVALTEDAMKYD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .36 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .07 RPM | 0 .00 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |