RetrogeneDB ID: | retro_etel_1681 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_287076:503..817(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000010433 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A1 | ||
Ensembl ID: | ENSETEG00000008183 | ||
Aliases: | None | ||
Description: | protein tyrosine phosphatase type IVA, member 1 [Source:HGNC Symbol;Acc:9634] |
Percent Identity: | 80.19 % |
Parental protein coverage: | 60.12 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | FDDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGR-APVLVA-LALIEGGMKYEDAVQFIRQKR |
F.D..PPS.QIV..W.S.VKIKF.EEPGCCIAVH.VAGLG..APVLVA.LALIEG.M.YED.VQFIRQK. | |
Retrocopy | FEDAGPPSDQIVSAWFSFVKIKFQEEPGCCIAVHGVAGLGE>APVLVA>LALIEGHMNYEDSVQFIRQKH |
Parental | RGAFNSKQLLYLEKYRPKMRLRFKDSNGHRNNCCIQ |
.GAFNSKQ.LYLEK.RPKMRLRFKDS.GHRNNCCIQ | |
Retrocopy | SGAFNSKQRLYLEKVRPKMRLRFKDSSGHRNNCCIQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |