RetrogeneDB ID: | retro_amel_1179 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193011.1:162797..163536(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSAMEG00000005144 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.75 % |
Parental protein coverage: | 80.13 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGS-KQMQQIRMSLR-GKAVVLMGKNTMMRKA-IRG |
M.REDRA.W.SNY.L.IIQLL.DYPKCF.VG..NVGS.KQMQ.I.MSL..GK.V.LM.KNT.M.KA...G | |
Retrocopy | MLREDRAGWNSNYVLRIIQLLNDYPKCFTVGLHNVGS<KQMQHIFMSLP>GKVVMLMAKNTLMHKA>TQG |
Parental | HLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSF |
HLENN.ALEKL......NVGFVFTKEDLTEIRDMLLANKVP....AGAIA.CEVTVPAQ.TGLG.EK.S. | |
Retrocopy | HLENN*ALEKLSLPTWQNVGFVFTKEDLTEIRDMLLANKVP----AGAIAQCEVTVPAQHTGLGSEKASI |
Parental | FQALGITTKISRGTIEILSDVQLIKTGDKVGAS-EATLLNMLNISPFSFGLIIQQVFDNRSIYNPEVLDI |
F.ALGITTKI.RGT.EILSD.QLIKT.DKVGAS...TLLNMLNIS....G.IIQ..FDN.SIYNPEV.DI | |
Retrocopy | FRALGITTKIFRGTSEILSDMQLIKTRDKVGAS<QTTLLNMLNIS---LGPIIQHMFDNGSIYNPEVPDI |
Parental | TEETLHSRFLEG-VRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVE |
TEET..S..L.G.V.NV.SVCLQ.GYPTVASVP.SIINGYK.VLALS.. | |
Retrocopy | TEETAFS-LLGG>VHNVVSVCLQTGYPTVASVPLSIINGYKWVLALSLQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |