RetrogeneDB ID: | retro_cfam_693 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 15:60212874..60213443(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP0 | ||
Ensembl ID: | ENSCAFG00000010227 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris ribosomal protein, large, P0 (RPLP0), mRNA. [Source:RefSeq mRNA;Acc:NM_001252137] |
Percent Identity: | 59.9 % |
Parental protein coverage: | 63.09 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | VVLMGKNTMMRKAIRG-HLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE |
V.L.....MM..AI.G.HLE.NPALEKLL.HI.GNV.FVF.K.DLTE.RD.LL.NKV.A.....AIA.CE | |
Retrocopy | VLLTV*HAMMHNAIEG<HLEDNPALEKLLFHIQGNVDFVFLK-DLTEMRDRLLTNKVQAGTCVNAIALCE |
Parental | VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQ |
VT........G..KTSFF.ALG....ISRGTIEILSDVQLIKT.DK..ASEATLLN....S.FSFGL.IQ | |
Retrocopy | VTXXXXXKNTG--KTSFF*ALG----ISRGTIEILSDVQLIKTRDKLEASEATLLNS---SLFSFGLSIQ |
Parental | QVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPH-SIINGYKRVLAL |
QVFD.GSI.N.E......E...S.FL......AS.CL.IGYP.VASVPH....N..K..L.L | |
Retrocopy | QVFDSGSICNLEAFWQHREST-SCFLDRDHSIASTCLEIGYPDVASVPHFNVMNRGKSWLSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 182 .53 RPM |
SRP017611_brain | 0 .00 RPM | 65 .42 RPM |
SRP017611_kidney | 0 .00 RPM | 860 .99 RPM |
SRP017611_liver | 0 .00 RPM | 131 .90 RPM |