RetrogeneDB ID: | retro_amel_1194 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193023.1:737590..738534(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSAMEG00000002769 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSAMEG00000005144 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.05 % |
Parental protein coverage: | 99.37 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MPREDRATWK-SNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHL |
MPREDR.TWK.SNYFLKIIQLL...PK.FIVGADNV.SKQMQQIRMSLRGKAVVLMGKNTMM.KAIRGHL | |
Retrocopy | MPREDRVTWK>SNYFLKIIQLLNHHPKIFIVGADNVCSKQMQQIRMSLRGKAVVLMGKNTMMCKAIRGHL |
Parental | ENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQ |
ENNPALEKLLPHIR.NVGFVFTKEDLTEIRDM.LANKVPAA.RAGA.APCEVTV.AQNTGLG..KTSFFQ | |
Retrocopy | ENNPALEKLLPHIRRNVGFVFTKEDLTEIRDMVLANKVPAATRAGATAPCEVTVTAQNTGLGSKKTSFFQ |
Parental | ALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNRSIYNPEVLDITEE |
A.GITTKISRGT.EIL.DVQLIKT.DKVGAS.ATLLN.LNISPFSFGLIIQQVFDNRSIYNPEVLDITE. | |
Retrocopy | ASGITTKISRGTTEILRDVQLIKTRDKVGASKATLLNVLNISPFSFGLIIQQVFDNRSIYNPEVLDITEK |
Parental | TLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLA-LSVETDYTFPL-AEKVKAFLADPSAFVA |
TLHS.FLEG..NVAS.CLQIGY.TVASVPHSI..GYKRVLA.LSVETDYTFPL.AEKVKAFLADPSAFVA | |
Retrocopy | TLHSCFLEGGLNVASICLQIGYLTVASVPHSITSGYKRVLA<LSVETDYTFPL<AEKVKAFLADPSAFVA |
Parental | AAPVAAATTAAPAAAAAPAKVEAKEESEESDEDMGFGL |
AAP.A.ATTAA.AAAAAPAK.EAKEE.EES..DMGFGL | |
Retrocopy | AAPMATATTAALAAAAAPAKAEAKEELEESEGDMGFGL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |