RetrogeneDB ID: | retro_cfam_487 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 12:38079896..38080845(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP0 | ||
Ensembl ID: | ENSCAFG00000010227 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris ribosomal protein, large, P0 (RPLP0), mRNA. [Source:RefSeq mRNA;Acc:NM_001252137] |
Percent Identity: | 87.77 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLE |
MP.EDRATWKSNYFLKIIQLLDDYPKCF.VGADNVGSKQMQQIRMSLRGKAVVLMG.NTM..KAI.GHLE | |
Retrocopy | MPKEDRATWKSNYFLKIIQLLDDYPKCFTVGADNVGSKQMQQIRMSLRGKAVVLMGRNTMICKAIQGHLE |
Parental | NNPALEKLLPHIRG-NVGFVFTKEDLTEIRDMLLANKVPAAARAGAI-APCEVTVPAQNTGLGPEKTSFF |
NNPALEKLLPHIRG.NVGFVFTKEDLTEIRDMLLANKVPAAA.AGAI..P.EVT..AQNTGLGPEKTSFF | |
Retrocopy | NNPALEKLLPHIRG<NVGFVFTKEDLTEIRDMLLANKVPAAAHAGAI<TPSEVTGSAQNTGLGPEKTSFF |
Parental | QALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSIYNPEVLDITE |
QALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSI.NPEVLDITE | |
Retrocopy | QALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSI*NPEVLDITE |
Parental | ETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAA |
ETLHSRFLEGVRNVASVCL.IGYPTVASVPHS.INGYKRVLALSVET.YTFPLAEKVKAFLA.PSAF... | |
Retrocopy | ETLHSRFLEGVRNVASVCLMIGYPTVASVPHSTINGYKRVLALSVETGYTFPLAEKVKAFLAGPSAFXXX |
Parental | APVAAATTAAPAAAAAPAKVEAKEESEESDEDMGFGLFD |
...............APAKVEAKEESEE.DEDM.FGL.D | |
Retrocopy | XXXXXXXXXXXXXXXAPAKVEAKEESEELDEDMEFGLLD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 5 .29 RPM | 182 .53 RPM |
SRP017611_brain | 0 .00 RPM | 65 .42 RPM |
SRP017611_kidney | 0 .13 RPM | 860 .99 RPM |
SRP017611_liver | 1 .16 RPM | 131 .90 RPM |