RetrogeneDB ID: | retro_cfam_534 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 12:71210049..71210529(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP0 | ||
Ensembl ID: | ENSCAFG00000010227 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris ribosomal protein, large, P0 (RPLP0), mRNA. [Source:RefSeq mRNA;Acc:NM_001252137] |
Percent Identity: | 55.36 % |
Parental protein coverage: | 50.79 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 7 |
Parental | KIIQLLDDYPKCFIVGADNVG-SKQMQQIRMSLRGKAVVLM-GKNTMMRKAIRGHLENNPALEKLLPHIR |
.IIQL..D.PK.F.VG.DN...S.QM.QI.MSL.G.AVVL..GKN.....AI.GHL.N.PALEK...HIR | |
Retrocopy | QIIQLFNDHPKGFPVGVDNNA<SRQMRQIGMSLLGEAVVLR<GKNVTVHEAI*GHLQNIPALEKWSLHIR |
Parental | G-NVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPC-EVTVPAQNT-GLGPEKTS-FFQAL-GITTKIS |
G...GFVFT..DLTEIRDMLL.NKV.A........P..EVT.PA.......P.K.S.FFQAL........ | |
Retrocopy | G<HMGFVFTQKDLTEIRDMLLDNKVRAQLSMLVAKPT>EVTAPAWSS<HMDPKKSS<FFQAL>NRPSSTP |
Parental | RGTIEILSDVQLIKTGDKVGASEATLLN |
R...EIL.DVQL.K.GD.V.A..A.LLN | |
Retrocopy | RRAPEILGDVQLRKVGDEVEAGKAILLN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 182 .53 RPM |
SRP017611_brain | 0 .00 RPM | 65 .42 RPM |
SRP017611_kidney | 0 .00 RPM | 860 .99 RPM |
SRP017611_liver | 0 .00 RPM | 131 .90 RPM |