Parental gene:

LDHB, ENSG00000111716

Aliases:LDHB, HEL-S-281, LDH-B, LDH-H, LDHBD, TRG-5
Description:lactate dehydrogenase B [Source:HGNC Symbol;Acc:6541]
Organism:Human (Homo sapiens)
Coordinates:12:21788275..21910791(-)


>ENSG00000111716
ATGGCAACTCTTAAGGAAAAACTCATTGCACCAGTTGCGGAAGAAGAGGCAACAGTTCCAAACAATAAGATCACTGTAGT
GGGTGTTGGACAAGTTGGTATGGCGTGTGCTATCAGCATTCTGGGAAAGTCTCTGGCTGATGAACTTGCTCTTGTGGATG
TTTTGGAAGATAAGCTTAAAGGAGAAATGATGGATCTGCAGCATGGGAGCTTATTTCTTCAGACACCTAAAATTGTGGCA
GATAAAGATTATTCTGTGACTGCCAATTCTAAGATTGTAGTGGTAACTGCAGGAGTCCGTCAGCAAGAAGGGGAGAGTCG
GCTCAATCTGGTGCAGAGAAATGTTAATGTCTTCAAATTCATTATTCCTCAGATCGTCAAGTACAGTCCTGATTGCATCA
TAATTGTGGTTTCCAACCCAGTGGACATTCTTACGTATGTTACCTGGAAACTAAGTGGATTACCCAAACACCGCGTGATT
GGAAGTGGATGTAATCTGGATTCTGCTAGATTTCGCTACCTTATGGCTGAAAAACTTGGCATTCATCCCAGCAGCTGCCA
TGGATGGATTTTGGGGGAACATGGCGACTCAAGTGTGGCTGTGTGGAGTGGTGTGAATGTGGCAGGTGTTTCTCTCCAGG
AATTGAATCCAGAAATGGGAACTGACAATGATAGTGAAAATTGGAAGGAAGTGCATAAGATGGTGGTTGAAAGTGCCTAT
GAAGTCATCAAGCTAAAAGGATATACCAACTGGGCTATTGGATTAAGTGTGGCTGATCTTATTGAATCCATGTTGAAAAA
TCTATCCAGGATTCATCCCGTGTCAACAATGGTAAAGGGGATGTATGGCATTGAGAATGAAGTCTTCCTGAGCCTTCCAT
GTATCCTCAATGCCCGGGGATTAACCAGCGTTATCAACCAGAAGCTAAAGGATGATGAGGTTGCTCAGCTCAAGAAAAGT
GCAGATACCCTGTGGGACATCCAGAAGGACCTAAAAGACCTGTGA

Library Parental gene expression (RPM)
bodymap2_adipose 598 .39 RPM
bodymap2_adrenal 335 .41 RPM
bodymap2_brain 756 .97 RPM
bodymap2_breast 668 .04 RPM
bodymap2_colon 417 .25 RPM
bodymap2_heart 1184 .37 RPM
bodymap2_kidney 1122 .52 RPM
bodymap2_liver 14 .05 RPM
bodymap2_lung 203 .06 RPM
bodymap2_lymph_node 301 .55 RPM
bodymap2_ovary 551 .47 RPM
bodymap2_prostate 360 .57 RPM
bodymap2_skeletal_muscle 95 .69 RPM
bodymap2_testis 334 .30 RPM
bodymap2_thyroid 608 .48 RPM
bodymap2_white_blood_cells 387 .95 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016175 possible_ortholog 4 retrogenes
retro_amel_1316, retro_amel_814, retro_amel_882, retro_amel_977,
Canis familiaris ENSCAFG00000012195 possible_ortholog 9 retrogenes
retro_cfam_1068, retro_cfam_111, retro_cfam_1674, retro_cfam_17, retro_cfam_1700, retro_cfam_174, retro_cfam_1836, retro_cfam_701, retro_cfam_93,
Echinops telfairi ENSETEG00000019955 ortholog_one2one 1 retrogene
retro_etel_850,
Felis catus ENSFCAG00000012639 possible_ortholog 1 retrogene
retro_fcat_462,
Homo sapiens ENSG00000134333 within_species_paralog 5 retrogenes
retro_hsap_2097, retro_hsap_2285, retro_hsap_3021, retro_hsap_323, retro_hsap_4231,
Homo sapiens ENSG00000166800 within_species_paralog 2 retrogenes
retro_hsap_42, retro_hsap_905,
Macropus eugenii ENSMEUG00000004825 ortholog_one2one 1 retrogene
retro_meug_311,
Myotis lucifugus ENSMLUG00000012155 possible_ortholog 1 retrogene
retro_mluc_202,
Macaca mulatta ENSMMUG00000002679 possible_ortholog 4 retrogenes
retro_mmul_212, retro_mmul_303, retro_mmul_308, retro_mmul_315,
Monodelphis domestica ENSMODG00000017786 ortholog_one2one 1 retrogene
retro_mdom_1484,
Mustela putorius furo ENSMPUG00000000172 possible_ortholog 5 retrogenes
retro_mputfur_1300, retro_mputfur_1561, retro_mputfur_492, retro_mputfur_539, retro_mputfur_549,
Sus scrofa ENSSSCG00000000576 possible_ortholog 1 retrogene
retro_sscr_37,
Tarsius syrichta ENSTSYG00000013759 ortholog_one2one 7 retrogenes
retro_tsyr_1130, retro_tsyr_1532, retro_tsyr_1860, retro_tsyr_2051, retro_tsyr_334, retro_tsyr_64, retro_tsyr_986,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_4863 85.71 100.00
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Download FASTA sequences of all ENSG00000111716 retrocopies