RetrogeneDB ID: | retro_ggor_1014 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 13:82187957..82188341(-) | ||
Located in intron of: | ENSGGOG00000034999 | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000027760 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H2AFZ | ||
Ensembl ID: | ENSGGOG00000027801 | ||
Aliases: | None | ||
Description: | Histone H2A [Source:UniProtKB/TrEMBL;Acc:G3SDI3] |
Percent Identity: | 82.44 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELA |
MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVG.IH.HLKSRT.....VGATAAVYS.AILEYLTAE.LELA | |
Retrocopy | MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGCIHQHLKSRTMGNRHVGATAAVYSTAILEYLTAEGLELA |
Parental | GNASKD-LKVK-RITPRHLQLAIRGDEELDS-LIKATIAGGGVIPHIHKSLIGKKGQQKTV |
GNASKD.LK.K..ITPRHLQLAIR.DEELDS........GG.VIPHIHKSLIGKKGQQKTV | |
Retrocopy | GNASKD<LKGKVYITPRHLQLAIRADEELDS>IKATIAGGG-VIPHIHKSLIGKKGQQKTV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .10 RPM | 54 .24 RPM |
SRP007412_cerebellum | 0 .00 RPM | 35 .30 RPM |
SRP007412_heart | 0 .00 RPM | 10 .19 RPM |
SRP007412_kidney | 0 .12 RPM | 26 .54 RPM |
SRP007412_liver | 0 .05 RPM | 19 .84 RPM |
SRP007412_testis | 0 .10 RPM | 87 .02 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1292 |
Pan troglodytes | retro_ptro_884 |
Pongo abelii | retro_pabe_1070 |
Macaca mulatta | retro_mmul_1320 |