RetrogeneDB ID: | retro_rnor_2413 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 7:4906371..4906752(+) | ||
Located in intron of: | ENSRNOG00000046552 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H2afz | ||
Ensembl ID: | ENSRNOG00000010306 | ||
Aliases: | None | ||
Description: | Histone H2A.Z [Source:UniProtKB/Swiss-Prot;Acc:P0C0S7] |
Percent Identity: | 90.55 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | AGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAG |
AGGKAGKDSGKAKTKAVS.SQRA.LQFPVG.IH.HLKSRTTSHGRVG.TAAVY.AAILEYLTAEVLELAG | |
Retrocopy | AGGKAGKDSGKAKTKAVSCSQRASLQFPVGHIH*HLKSRTTSHGRVGMTAAVYNAAILEYLTAEVLELAG |
Parental | NASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKTV |
NA.KDLK.KRIT.RHLQLAIRGDEELDSLIKATIA.GGVIPHIHKSLI..KGQQKTV | |
Retrocopy | NA*KDLKGKRITHRHLQLAIRGDEELDSLIKATIAVGGVIPHIHKSLIRNKGQQKTV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 33 .00 RPM |
SRP017611_kidney | 0 .07 RPM | 31 .89 RPM |
SRP017611_liver | 0 .00 RPM | 17 .21 RPM |