RetrogeneDB ID: | retro_pabe_1070 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 13:101553346..101553732(-) | ||
Located in intron of: | ENSPPYG00000005465 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H2AFZ | ||
Ensembl ID: | ENSPPYG00000014957 | ||
Aliases: | None | ||
Description: | Histone H2A.Z [Source:UniProtKB/Swiss-Prot;Acc:Q5RC42] |
Percent Identity: | 90. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELA |
MAGGKAGKDSGKAKTK.VSRSQRAGLQFPVG.IH.H.KSRTT.HG.VGATAAVYSAAILEYLTAE.LELA | |
Retrocopy | MAGGKAGKDSGKAKTKVVSRSQRAGLQFPVGCIHQHPKSRTTGHGHVGATAAVYSAAILEYLTAEGLELA |
Parental | GNASKD-LKVK-RITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKTV |
GNASKD.LK.K..ITPRHLQLAIR.DEELDSLIKATIAGGGVIPHIHKSLIGK.GQQKTV | |
Retrocopy | GNASKD<LKGKVYITPRHLQLAIRADEELDSLIKATIAGGGVIPHIHKSLIGKNGQQKTV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 30 .96 RPM |
SRP007412_cerebellum | 0 .00 RPM | 26 .27 RPM |
SRP007412_heart | 0 .00 RPM | 9 .99 RPM |
SRP007412_kidney | 0 .03 RPM | 19 .52 RPM |
SRP007412_liver | 0 .12 RPM | 12 .55 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1292 |
Pan troglodytes | retro_ptro_884 |
Gorilla gorilla | retro_ggor_1014 |
Macaca mulatta | retro_mmul_1320 |