RetrogeneDB ID: | retro_mmul_2368 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 8:114082340..114082697(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2622 | ||
Ensembl ID: | ENSMMUG00000006834 | ||
Aliases: | None | ||
Description: | H2A histone family, member Z [Source:RefSeq peptide;Acc:NP_001180479] |
Percent Identity: | 65.85 % |
Parental protein coverage: | 94.49 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | DSGKAKTKAVSRSQRAGLQFPVGRIHRHL-KSRTT-SHGRVGATAAVYSAAILEYL-TAEVLELAGNASK |
D..KAKTK.VS..QR..LQF.....H.HL..SRTT.SHG.VG.TA.VY.AAILEY..T..VLEL.G.ASK | |
Retrocopy | DLEKAKTKVVSY*QRVCLQFLLVCLHQHL<ESRTT<SHGHVGTTATVYHAAILEYT<TTKVLELVGRASK |
Parental | DLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKTV |
DLKVK.IT..HLQLA..GDEELD.LIK.TI..G.VI.HIHK.LI..K..QKTV | |
Retrocopy | DLKVKHITLCHLQLAVHGDEELDYLIKITITNGSVIAHIHKALIREKRKQKTV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 30 .70 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 54 .98 RPM |
SRP007412_cerebellum | 0 .00 RPM | 33 .51 RPM |
SRP007412_heart | 0 .00 RPM | 9 .48 RPM |
SRP007412_kidney | 0 .00 RPM | 17 .61 RPM |
SRP007412_liver | 0 .00 RPM | 12 .75 RPM |
SRP007412_testis | 0 .00 RPM | 74 .11 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4113 |
Pan troglodytes | retro_ptro_2792 |
Gorilla gorilla | retro_ggor_2760 |