RetrogeneDB ID: | retro_ptro_884 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 13:99456345..99456729(-) | ||
Located in intron of: | ENSPTRG00000005994 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H2AFZ | ||
Ensembl ID: | ENSPTRG00000016312 | ||
Aliases: | None | ||
Description: | H2A histone family, member Z [Source:HGNC Symbol;Acc:4741] |
Percent Identity: | 83.21 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELA |
MA.GKAGKDSGKAKTKAVSRSQRAGLQFP.G.IH.HLKSRTT.H..VGATAAVYSAAILEYLTAE.LELA | |
Retrocopy | MADGKAGKDSGKAKTKAVSRSQRAGLQFPEGCIHQHLKSRTTGHRHVGATAAVYSAAILEYLTAEGLELA |
Parental | GNASKD-LKVK-RITPRHLQLAIRGDEELDS-LIKATIAGGGVIPHIHKSLIGKKGQQKTV |
GNASKD.LK.K..ITPRHLQLAIR.DEELDS........GG.VIPHIHKSLIGKKGQQKTV | |
Retrocopy | GNASKD<LKGKVYITPRHLQLAIRADEELDS>IKATIAGGG-VIPHIHKSLIGKKGQQKTV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 64 .42 RPM |
SRP007412_cerebellum | 0 .11 RPM | 57 .61 RPM |
SRP007412_heart | 0 .03 RPM | 18 .27 RPM |
SRP007412_kidney | 0 .05 RPM | 48 .17 RPM |
SRP007412_liver | 0 .00 RPM | 54 .70 RPM |
SRP007412_testis | 0 .32 RPM | 119 .50 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1292 |
Gorilla gorilla | retro_ggor_1014 |
Pongo abelii | retro_pabe_1070 |
Macaca mulatta | retro_mmul_1320 |