RetrogeneDB ID: | retro_pabe_3367 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 8:118812530..118812743(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H2AFZ | ||
Ensembl ID: | ENSPPYG00000014957 | ||
Aliases: | None | ||
Description: | Histone H2A.Z [Source:UniProtKB/Swiss-Prot;Acc:Q5RC42] |
Percent Identity: | 64. % |
Parental protein coverage: | 56.25 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | DSGKAKTKAVSRSQRAGLQFPVGRIHRHL-KSRTT-SHGRVGATAAVYSAAILEYL-TAEVLELAGNASK |
D..KAKT..VS..QR..LQF.....H.HL..SRTT.SHG.VG.TA.VY.AAILEY..TA.VLEL.G.ASK | |
Retrocopy | DLEKAKTTVVSY*QRVCLQFLLVGLHQHL<ESRTT<SHGHVGTTATVYHAAILEYT<TAKVLELVGRASK |
Parental | DLKVK |
.LKVK | |
Retrocopy | GLKVK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 30 .96 RPM |
SRP007412_cerebellum | 0 .00 RPM | 26 .27 RPM |
SRP007412_heart | 0 .00 RPM | 9 .99 RPM |
SRP007412_kidney | 0 .00 RPM | 19 .52 RPM |
SRP007412_liver | 0 .00 RPM | 12 .55 RPM |