RetrogeneDB ID: | retro_mmus_3585 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | X:22205169..22205442(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000082175 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H2afz | ||
Ensembl ID: | ENSMUSG00000037894 | ||
Aliases: | H2afz, H2A.Z, H2a.z-1 | ||
Description: | H2A histone family, member Z [Source:MGI Symbol;Acc:MGI:1888388] |
Percent Identity: | 75.82 % |
Parental protein coverage: | 71.09 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | KSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAG |
KSRTTS.G.V.A.A.VYS..ILE..TAE.LELAGNAS..L..K.ITP.HLQLAIR.DE.LD.LIKATIAG | |
Retrocopy | KSRTTSQGHVSAPAVVYSLVILENFTAELLELAGNASNNLNIKHITPCHLQLAIRVDE*LDYLIKATIAG |
Parental | GGVIPHIHKSLIGKKGQQKTV |
GG.IPHIHKS.I.KKGQQKTV | |
Retrocopy | GGIIPHIHKSPIEKKGQQKTV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 23 .71 RPM |
SRP007412_cerebellum | 0 .00 RPM | 27 .96 RPM |
SRP007412_heart | 0 .00 RPM | 17 .09 RPM |
SRP007412_kidney | 0 .00 RPM | 21 .10 RPM |
SRP007412_liver | 0 .00 RPM | 15 .54 RPM |
SRP007412_testis | 0 .00 RPM | 73 .59 RPM |