RetrogeneDB ID: | retro_rnor_1605 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 2:14295648..14295876(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H2afz | ||
Ensembl ID: | ENSRNOG00000010306 | ||
Aliases: | None | ||
Description: | Histone H2A.Z [Source:UniProtKB/Swiss-Prot;Acc:P0C0S7] |
Percent Identity: | 76.92 % |
Parental protein coverage: | 61.42 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | AAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIG |
AAVYSAAILE.LT..VLELAGNASKDLK.K.ITP.HLQLAI.GDEE.D......IAGGGVIPHIH..L.G | |
Retrocopy | AAVYSAAILE*LTEIVLELAGNASKDLKIK*ITP-HLQLAIHGDEEFDT-DSGYIAGGGVIPHIHQALTG |
Parental | KKGQQKTV |
KKGQ.KTV | |
Retrocopy | KKGQKKTV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 33 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 31 .89 RPM |
SRP017611_liver | 0 .00 RPM | 17 .21 RPM |