RetrogeneDB ID: | retro_opri_404 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_10921:12663..12889(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOPRG00000005610 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H2AFZ | ||
Ensembl ID: | ENSOPRG00000012582 | ||
Aliases: | None | ||
Description: | H2A histone family, member Z [Source:HGNC Symbol;Acc:4741] |
Percent Identity: | 73.75 % |
Parental protein coverage: | 60.94 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | AAVYSAAILEYLTAEVLELAGNASKDLKV-KRITPRHLQLAIR-GDEELDSLIKATIAGGGVIPHIHKSL |
A.V.SAAI.EYLTA..LEL.GNAS.D.KV...ITPRHLQLAI..G.EELDS.IKATIA..GVIPH.HKSL | |
Retrocopy | ATVDSAAIPEYLTAPGLELVGNASNDQKV<NSITPRHLQLAIV<GGEELDSQIKATIATAGVIPHSHKSL |
Parental | IGKKGQQKTV |
.G.K.QQKTV | |
Retrocopy | -GRK-QQKTV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |