RetrogeneDB ID: | retro_lafr_1255 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_99:1007615..1007996(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H2AFZ | ||
Ensembl ID: | ENSLAFG00000028460 | ||
Aliases: | None | ||
Description: | Histone H2A [Source:UniProtKB/TrEMBL;Acc:G3TSP2] |
Percent Identity: | 76.38 % |
Parental protein coverage: | 99.22 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | AGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAG |
A..KAGKDS.K.KTKAVS..QRAG..F.VG.IH.H.KSRTTSHG..GATA.V..AA.L..LT.EVLELAG | |
Retrocopy | AASKAGKDSRKVKTKAVSHWQRAGF*FLVGCIHQHTKSRTTSHGHMGATATV*RAATLQHLTKEVLELAG |
Parental | NASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKTV |
NA.KDLKVK.ITP.HLQLAI.GDEELDS.IKATIAGG.VIPH.HKSL.GKKGQQK.V | |
Retrocopy | NALKDLKVKFITPYHLQLAI*GDEELDSVIKATIAGGDVIPHNHKSLTGKKGQQKMV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |