RetrogeneDB ID: | retro_mmul_1593 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 3:2678704..2678933(+) | ||
Located in intron of: | ENSMMUG00000005269 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2622 | ||
Ensembl ID: | ENSMMUG00000006834 | ||
Aliases: | None | ||
Description: | H2A histone family, member Z [Source:RefSeq peptide;Acc:NP_001180479] |
Percent Identity: | 74.36 % |
Parental protein coverage: | 60.63 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | AGGKAGKDSGKAKTKAVSRSQRAGLQFP-VGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELA |
AG.KAGKDSGKA.TKAVSRSQ...L..P.VG.IHRHLKSR...HGRVG.TAAVY.A..LEYL..E..ELA | |
Retrocopy | AGSKAGKDSGKATTKAVSRSQ-SRLAVP>VGCIHRHLKSRMAGHGRVGTTAAVYDAVMLEYLATEGPELA |
Parental | GNASKDLK |
GNASKDLK | |
Retrocopy | GNASKDLK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 30 .70 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 54 .98 RPM |
SRP007412_cerebellum | 0 .32 RPM | 33 .51 RPM |
SRP007412_heart | 0 .00 RPM | 9 .48 RPM |
SRP007412_kidney | 0 .12 RPM | 17 .61 RPM |
SRP007412_liver | 0 .04 RPM | 12 .75 RPM |
SRP007412_testis | 0 .19 RPM | 74 .11 RPM |