RetrogeneDB ID: | retro_mmul_2465 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 9:94255679..94256060(-) | ||
Located in intron of: | ENSMMUG00000017255 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2622 | ||
Ensembl ID: | ENSMMUG00000006834 | ||
Aliases: | None | ||
Description: | H2A histone family, member Z [Source:RefSeq peptide;Acc:NP_001180479] |
Percent Identity: | 92.91 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | AGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAG |
AGGKAGKDSGKAKTKA.SR.QRAGLQFPVG.IHRHLKSRTTS.GRVGATAAVYSAAILEYLT.EVLELAG | |
Retrocopy | AGGKAGKDSGKAKTKALSRAQRAGLQFPVGFIHRHLKSRTTSQGRVGATAAVYSAAILEYLTVEVLELAG |
Parental | NASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKTV |
NASKDLKVKRITP.HLQLAIRGDEELD.LIKA.IAG.GVIPHIHKSLIGKKGQQKTV | |
Retrocopy | NASKDLKVKRITPCHLQLAIRGDEELDLLIKAIIAGDGVIPHIHKSLIGKKGQQKTV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .56 RPM | 30 .70 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 54 .98 RPM |
SRP007412_cerebellum | 0 .65 RPM | 33 .51 RPM |
SRP007412_heart | 0 .24 RPM | 9 .48 RPM |
SRP007412_kidney | 0 .12 RPM | 17 .61 RPM |
SRP007412_liver | 0 .44 RPM | 12 .75 RPM |
SRP007412_testis | 0 .60 RPM | 74 .11 RPM |