RetrogeneDB ID: | retro_hsap_283 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 1:199356675..199357600(+) | ||
Located in intron of: | ENSG00000231718 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000236468 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EEF1A1 | ||
Ensembl ID: | ENSG00000156508 | ||
Aliases: | EEF1A1, CCS-3, CCS3, EE1A1, EEF-1, EEF1A, EF-Tu, EF1A, GRAF-1EF, HNGC:16303, LENG7, PTI1, eEF1A-1 | ||
Description: | eukaryotic translation elongation factor 1 alpha 1 [Source:HGNC Symbol;Acc:3189] |
Percent Identity: | 73.67 % |
Parental protein coverage: | 67.32 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 8 |
Parental | VNKMDSTEPPYS-QKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKD |
V.KMDS.EP.YS..................IGY.P..VAFVPISGWN.DNM.EPSA.MPWF.GWKVT.KD | |
Retrocopy | VSKMDSAEPLYS>RRNTRKLLRKLALTV--IGYKPAIVAFVPISGWNRDNMPEPSAHMPWFNGWKVTCKD |
Parental | GNA-SGTTLLEALDCILP-PTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMV-VTFAPVNVTT |
GNA.SGTTLLEALDCI.P....P....L.LP.QDVYKIG.IG.VP.G.VETGVLKP.MV.V.FA.VNVTT | |
Retrocopy | GNA<SGTTLLEALDCIHP<KPMPSTDKLHLPFQDVYKIGSIGNVPLG*VETGVLKPSMV<VPFALVNVTT |
Parental | EVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGY |
E.KSVEMHHEALSEALPGD..GFN.KNVSVKDVR.GNV.GDSKNDPPMEAAGFTAQVIILNHPGQI..G. | |
Retrocopy | EIKSVEMHHEALSEALPGDSMGFNIKNVSVKDVRCGNVVGDSKNDPPMEAAGFTAQVIILNHPGQIPVGS |
Parental | APVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAI-VDMVPGKPMC-VESFSDYPPLGRFA |
APVLDCHTAH..CKFAELKEKID..SGKKLE.GPKFLKSGDAAI.VD.VPGKP...VE..SDYPPL...A | |
Retrocopy | APVLDCHTAHLTCKFAELKEKIDCHSGKKLENGPKFLKSGDAAI>VDEVPGKPRM<VEDSSDYPPLRPLA |
Parental | VRDMRQTVAV-GVIKAVDKKAA-GAGKVTKSAQKAQKAK |
VR..R.T.AV.GVI...DKKAA.GAGK.TKS.QKAQKAK | |
Retrocopy | VRNAR*TAAV<GVIQVADKKAA>GAGKFTKSPQKAQKAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 5264 .08 RPM |
bodymap2_adrenal | 0 .00 RPM | 4408 .93 RPM |
bodymap2_brain | 0 .00 RPM | 1165 .02 RPM |
bodymap2_breast | 0 .00 RPM | 3630 .18 RPM |
bodymap2_colon | 0 .02 RPM | 6218 .58 RPM |
bodymap2_heart | 0 .00 RPM | 698 .42 RPM |
bodymap2_kidney | 0 .00 RPM | 2811 .08 RPM |
bodymap2_liver | 0 .00 RPM | 1314 .04 RPM |
bodymap2_lung | 0 .00 RPM | 6336 .68 RPM |
bodymap2_lymph_node | 0 .00 RPM | 5735 .42 RPM |
bodymap2_ovary | 0 .00 RPM | 7786 .50 RPM |
bodymap2_prostate | 0 .02 RPM | 8544 .31 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 972 .29 RPM |
bodymap2_testis | 0 .00 RPM | 3096 .81 RPM |
bodymap2_thyroid | 0 .00 RPM | 4724 .61 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 9598 .56 RPM |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .08 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .10 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .05 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .03 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .03 RPM |
FIN_HG00321 | 0 .03 RPM |
FIN_HG00328 | 0 .02 RPM |
FIN_HG00338 | 0 .02 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .02 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .03 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .03 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .05 RPM |
TSI_NA20518 | 0 .06 RPM |
TSI_NA20532 | 0 .07 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .06 RPM |
TSI_NA20765 | 0 .04 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .05 RPM |
YRI_NA19099 | 0 .03 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |