RetrogeneDB ID: | retro_fcat_1825 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | F2:58500295..58501048(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000026829 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EEF1A1 | ||
Ensembl ID: | ENSFCAG00000030977 | ||
Aliases: | EEF1A1, EF1A | ||
Description: | Elongation factor 1-alpha 1 [Source:UniProtKB/Swiss-Prot;Acc:Q66RN5] |
Percent Identity: | 75.98 % |
Parental protein coverage: | 53.68 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | KGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV |
K...K.AWVL.KL.AE.E.GI.I..SLWKFETSK.YVTI..APGHRDFIKNM..GTS.ADC.VL.VAAGV | |
Retrocopy | KNPCKHAWVLGKLRAESEHGIAIGMSLWKFETSKHYVTITNAPGHRDFIKNMLAGTSEADCTVLPVAAGV |
Parental | GEFEAGISKNGQTREHALLAYT-LGVKQLIVGVNKMDS----TEPPYSQKRYEEIVKE-VSTYIKKIGYN |
GEFEAGISKN.QT.EHALLA.T.L.VK.L.VGVNKMDS....TE....QKRYEEIVK...STYIKKIG.N | |
Retrocopy | GEFEAGISKNEQTHEHALLAST>LAVKLLHVGVNKMDSLNHPTEEILKQKRYEEIVKG<ISTYIKKIGNN |
Parental | PDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVY |
.D..AFVPISGWNGDN.LEP.AN.PWFKGWKVT.KDGNASGTTLLE.LDC.LPPT.PT.KPL..P.QDVY | |
Retrocopy | LD-IAFVPISGWNGDNLLEPRANVPWFKGWKVTHKDGNASGTTLLEPLDCMLPPTHPTNKPLCRPFQDVY |
Parental | KIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEA |
KIG.IGTVPVG.VETGVLKP..VV.FAPV.VTTE.KSVE.HH.A | |
Retrocopy | KIGEIGTVPVGPVETGVLKPSVVVPFAPVSVTTEAKSVERHHDA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 1486 .30 RPM |
SRP017611_kidney | 0 .00 RPM | 9381 .03 RPM |
SRP017611_liver | 0 .00 RPM | 6481 .18 RPM |