RetrogeneDB ID: | retro_hsap_1567 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 15:53229981..53230715(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000259612 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EEF1A1 | ||
Ensembl ID: | ENSG00000156508 | ||
Aliases: | EEF1A1, CCS-3, CCS3, EE1A1, EEF-1, EEF1A, EF-Tu, EF1A, GRAF-1EF, HNGC:16303, LENG7, PTI1, eEF1A-1 | ||
Description: | eukaryotic translation elongation factor 1 alpha 1 [Source:HGNC Symbol;Acc:3189] |
Percent Identity: | 85.77 % |
Parental protein coverage: | 53.03 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIE-KFEKEAAEMGKGSFKYAWVLDKLKAERER |
MG.EKT.INIV.IG...SGKSTT.GHLIYKC.GIDKRTIE.KFEKEAAEMGKGSFKYAWVLDKLKAERE. | |
Retrocopy | MGEEKTYINIVIIGRIGSGKSTTAGHLIYKCSGIDKRTIE<KFEKEAAEMGKGSFKYAWVLDKLKAEREH |
Parental | GITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALL |
GITI.ISLWKFETS.YYVTI.D.PGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKN.QT...ALL | |
Retrocopy | GITIHISLWKFETSRYYVTITDVPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNEQT*KPALL |
Parental | AYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMP |
AYTLGVK.LIVGVNKM.STEP.YSQ.RYEEI.KEVSTY.KKIGYNP.TVAFVPIS.WNG.NMLEPSANMP | |
Retrocopy | AYTLGVKELIVGVNKMNSTEPHYSQ*RYEEIFKEVSTYTKKIGYNPGTVAFVPISDWNGGNMLEPSANMP |
Parental | WFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKP |
WFKGWK.T.....A.G.TLLEALDCILPPTRPTDKP | |
Retrocopy | WFKGWKFTCNYCSAIGPTLLEALDCILPPTRPTDKP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .10 RPM | 5264 .08 RPM |
bodymap2_adrenal | 0 .00 RPM | 4408 .93 RPM |
bodymap2_brain | 0 .00 RPM | 1165 .02 RPM |
bodymap2_breast | 0 .12 RPM | 3630 .18 RPM |
bodymap2_colon | 0 .04 RPM | 6218 .58 RPM |
bodymap2_heart | 0 .00 RPM | 698 .42 RPM |
bodymap2_kidney | 0 .02 RPM | 2811 .08 RPM |
bodymap2_liver | 0 .00 RPM | 1314 .04 RPM |
bodymap2_lung | 0 .00 RPM | 6336 .68 RPM |
bodymap2_lymph_node | 0 .11 RPM | 5735 .42 RPM |
bodymap2_ovary | 0 .13 RPM | 7786 .50 RPM |
bodymap2_prostate | 0 .02 RPM | 8544 .31 RPM |
bodymap2_skeletal_muscle | 0 .02 RPM | 972 .29 RPM |
bodymap2_testis | 0 .02 RPM | 3096 .81 RPM |
bodymap2_thyroid | 0 .09 RPM | 4724 .61 RPM |
bodymap2_white_blood_cells | 0 .32 RPM | 9598 .56 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_1193 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .04 RPM |
CEU_NA11843 | 0 .03 RPM |
CEU_NA11930 | 0 .39 RPM |
CEU_NA12004 | 0 .11 RPM |
CEU_NA12400 | 0 .46 RPM |
CEU_NA12751 | 0 .41 RPM |
CEU_NA12760 | 0 .36 RPM |
CEU_NA12827 | 0 .19 RPM |
CEU_NA12872 | 0 .27 RPM |
CEU_NA12873 | 0 .06 RPM |
FIN_HG00183 | 0 .25 RPM |
FIN_HG00277 | 0 .48 RPM |
FIN_HG00315 | 0 .17 RPM |
FIN_HG00321 | 0 .57 RPM |
FIN_HG00328 | 0 .14 RPM |
FIN_HG00338 | 0 .23 RPM |
FIN_HG00349 | 0 .17 RPM |
FIN_HG00375 | 0 .12 RPM |
FIN_HG00377 | 0 .13 RPM |
FIN_HG00378 | 0 .28 RPM |
GBR_HG00099 | 0 .15 RPM |
GBR_HG00111 | 0 .06 RPM |
GBR_HG00114 | 0 .16 RPM |
GBR_HG00119 | 0 .24 RPM |
GBR_HG00131 | 0 .34 RPM |
GBR_HG00133 | 0 .22 RPM |
GBR_HG00134 | 0 .35 RPM |
GBR_HG00137 | 0 .16 RPM |
GBR_HG00142 | 0 .11 RPM |
GBR_HG00143 | 0 .10 RPM |
TSI_NA20512 | 0 .25 RPM |
TSI_NA20513 | 0 .05 RPM |
TSI_NA20518 | 0 .11 RPM |
TSI_NA20532 | 0 .14 RPM |
TSI_NA20538 | 0 .23 RPM |
TSI_NA20756 | 0 .38 RPM |
TSI_NA20765 | 0 .25 RPM |
TSI_NA20771 | 0 .14 RPM |
TSI_NA20786 | 0 .24 RPM |
TSI_NA20798 | 0 .19 RPM |
YRI_NA18870 | 0 .24 RPM |
YRI_NA18907 | 0 .38 RPM |
YRI_NA18916 | 0 .27 RPM |
YRI_NA19093 | 0 .18 RPM |
YRI_NA19099 | 0 .21 RPM |
YRI_NA19114 | 0 .45 RPM |
YRI_NA19118 | 0 .19 RPM |
YRI_NA19213 | 0 .38 RPM |
YRI_NA19214 | 0 .42 RPM |
YRI_NA19223 | 0 .26 RPM |