RetrogeneDB ID: | retro_fcat_688 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:32040667..32041713(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000009351 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EEF1A1 | ||
Ensembl ID: | ENSFCAG00000030977 | ||
Aliases: | EEF1A1, EF1A | ||
Description: | Elongation factor 1-alpha 1 [Source:UniProtKB/Swiss-Prot;Acc:Q66RN5] |
Percent Identity: | 74.93 % |
Parental protein coverage: | 77.06 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | SQADCAVLIVAAGVGEFEAGISKNG-QTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVS |
SQA.C.VLIVAA.VGE.EAGI..NG.QT.EHALLAYTLGVKQ..VGVNKMD.TEPPYS.KRYEE.VK.V. | |
Retrocopy | SQANCTVLIVAA-VGELEAGIM-NG<QTHEHALLAYTLGVKQPFVGVNKMDPTEPPYSWKRYEEMVKKVI |
Parental | TYI-KKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDK |
TYI..K....P..VAFVPI.GWNGDNML..SANMP.FKGWK.T.KDGN.SGT.LLEALDCILPPT.PT.K | |
Retrocopy | TYI>RKLATIP--VAFVPIFGWNGDNMLQQSANMPSFKGWKLTYKDGNSSGTMLLEALDCILPPTCPTHK |
Parental | PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKN |
PL.L..QD.YKI..IGTVPVG.VET.VLKP.MVVT.A..NV.TEVKSV.MHHE.LSE.LPG.N..FNVKN | |
Retrocopy | PLCLSHQDIYKIDCIGTVPVGQVETSVLKPVMVVTSALLNVRTEVKSVDMHHETLSETLPGENIDFNVKN |
Parental | VSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKF-AELKEKIDRRS |
.SVK.V..GNVA.DSKNDP.MEAA.F..Q...LNHPGQISAGY..VLD.HTA...CK..AEL.EKID..S | |
Retrocopy | ISVKYVHHGNVADDSKNDPSMEAASF--QDNHLNHPGQISAGYTTVLDFHTAYTTCKL<AEL-EKIDHHS |
Parental | GKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKKAAGAGKVTK |
GKKLEDGP..LKSGDAAIV.MVPGKPMCV.S.SDYP.LG.FAV.DMRQT.AVGVIKAVD.K.AGAGKVT. | |
Retrocopy | GKKLEDGPRLLKSGDAAIVCMVPGKPMCVASISDYPLLGHFAVCDMRQTIAVGVIKAVDNKIAGAGKVTR |
Parental | SAQKAQKAK |
..Q.AQKAK | |
Retrocopy | YVQEAQKAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 1486 .30 RPM |
SRP017611_kidney | 0 .00 RPM | 9381 .03 RPM |
SRP017611_liver | 0 .00 RPM | 6481 .18 RPM |