RetrogeneDB ID: | retro_ocun_1102 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 2:77410153..77410882(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RABEFLA2 | ||
Ensembl ID: | ENSOCUG00000008481 | ||
Aliases: | EEF1A1, RABEFLA2 | ||
Description: | eukaryotic translation elongation factor 1 alpha 1 (EEF1A1), mRNA [Source:RefSeq mRNA;Acc:NM_001082339] |
Percent Identity: | 67.73 % |
Parental protein coverage: | 53.68 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGI |
GK.K..I.....GHVDSG.STTT..L.Y..G.I..RT.EKF.KEAA.M.K...KY..VLDKLKAE.E.G. | |
Retrocopy | GKGKIGIHTIITGHVDSGRSTTTDRLVYEGGRIKRRTVEKFRKEAARMEKDFCKYSQVLDKLKAECELGT |
Parental | TIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCA-VLIVAAGVGEFEAGISKNGQT-REHALL |
TI.I.LWK.E..K.YVT.ID.PGHRD.I.N...GTSQA....VL.VAAGVGE.EAGISKNG.T.REHALL | |
Retrocopy | TINIPLWKCESGKCYVTVIDVPGHRDCIRNTSAGTSQAEHG<VLGVAAGVGECEAGISKNGRT<REHALL |
Parental | AYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMP |
AYTLGVKQLIVGVNKM..T....S....EEI..EVST.IKKIG.NPDTV.FVPISG.N.DNMLE.SANM. | |
Retrocopy | AYTLGVKQLIVGVNKMGFT---HSHSQPEEI-QEVSTDIKKIGCNPDTVPFVPISG*NRDNMLETSANMR |
Parental | WFKGWKVTRKDGN-ASGTTLLEALDCILPPTRPTDKPLRLP |
WFKGWKV..KDG....GTTLLEALDCI.PPTR...KPL..P | |
Retrocopy | WFKGWKVSSKDGH<CHGTTLLEALDCIPPPTRANGKPLHCP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 1055 .04 RPM |
SRP017611_kidney | 0 .00 RPM | 4707 .70 RPM |
SRP017611_liver | 0 .00 RPM | 1113 .73 RPM |