RetrogeneDB ID: | retro_fcat_566 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:125474735..125476118(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000028374 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EEF1A1 | ||
Ensembl ID: | ENSFCAG00000030977 | ||
Aliases: | EEF1A1, EF1A | ||
Description: | Elongation factor 1-alpha 1 [Source:UniProtKB/Swiss-Prot;Acc:Q66RN5] |
Percent Identity: | 86.72 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 5 |
Parental | MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERG |
M.KEKTHINIVVI.HVDSGKSTTTGHLIYKC.GI.KRTIEKFEKEAAEM..GSFKYAWVLDKLK.ERERG | |
Retrocopy | MVKEKTHINIVVIAHVDSGKSTTTGHLIYKCVGIEKRTIEKFEKEAAEMQQGSFKYAWVLDKLKVERERG |
Parental | ITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ-ADCAVLIVAAGVGEF-EAGISKNGQTREHAL |
ITIDI.L.KFE.SKYYVTIIDAP.HRDFIKNMITGTSQ.ADCAVLIVAAGVGEF.EAGISKN.QTREHAL | |
Retrocopy | ITIDIFLCKFESSKYYVTIIDAPEHRDFIKNMITGTSQ<ADCAVLIVAAGVGEF>EAGISKNEQTREHAL |
Parental | LAYTLGVKQLIVGVNKMDSTEP-PYSQKRYEEIVKEVSTYIKKI-GYNPDTVAFVPISGWNGDNMLEPSA |
LAYTLGVKQLIVGVNKMDSTEP............K.......K..GYNPDTVAFVPISG.NGDNMLEPSA | |
Retrocopy | LAYTLGVKQLIVGVNKMDSTEP<TRARRDTRKSLKKSAPTLRKL<GYNPDTVAFVPISGRNGDNMLEPSA |
Parental | NMPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLP-LQDVYKIGGIGTVPVGRVETGVLKPG |
NMPWFKGWKVT.KDGN.SGTTLLEALDCILPPTRPTDKPL.LP...DVYKIGGIGTVPVGRVET.VLKPG | |
Retrocopy | NMPWFKGWKVTHKDGNDSGTTLLEALDCILPPTRPTDKPLHLP<PRDVYKIGGIGTVPVGRVETSVLKPG |
Parental | MVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVI |
MVVTFAPV.VTTEV.SVEM.HEALSEALPGDNVGFNVKNVSVKDVRRGNVAG..KNDP.MEAAGFTAQVI | |
Retrocopy | MVVTFAPVDVTTEVESVEMDHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGERKNDPLMEAAGFTAQVI |
Parental | ILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESF |
ILNHPGQIS.GYAP.LDCHTAHIACKFAE.KEKID..SGKKLE.GPKFLKSGDAAIVDMVPGK.MCV..F | |
Retrocopy | ILNHPGQISTGYAPMLDCHTAHIACKFAEPKEKIDCHSGKKLEYGPKFLKSGDAAIVDMVPGKTMCVGNF |
Parental | SDYPPLGRFAVRDMRQTVAVGVIKAVDKKAAGAGKVTKSAQKAQKAK |
SDYPPL..FA.RDMRQ.VAVGVIKAVDKKAAGAGKVTKSAQKAQKAK | |
Retrocopy | SDYPPLDHFAIRDMRQMVAVGVIKAVDKKAAGAGKVTKSAQKAQKAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 1486 .30 RPM |
SRP017611_kidney | 1 .55 RPM | 9381 .03 RPM |
SRP017611_liver | 1 .11 RPM | 6481 .18 RPM |