RetrogeneDB ID: | retro_btau_114 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 7:34615434..34616823(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000046688 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EEF1A1 | ||
Ensembl ID: | ENSBTAG00000014534 | ||
Aliases: | None | ||
Description: | Elongation factor 1-alpha 1 [Source:UniProtKB/Swiss-Prot;Acc:P68103] |
Percent Identity: | 97.19 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERG |
MGKEKTHINI.VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAA.MGKGSFKYAWVL.KLKAERERG | |
Retrocopy | MGKEKTHINIIVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAKMGKGSFKYAWVLNKLKAERERG |
Parental | ITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLA |
ITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA.VGEFEAGISKNGQTREHALLA | |
Retrocopy | ITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAAVGEFEAGISKNGQTREHALLA |
Parental | YTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPW |
YTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDN.LEPSANMPW | |
Retrocopy | YTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNTLEPSANMPW |
Parental | FKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTF |
FKG.KVT.KDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGT.PVGRVETGVLKPGMVVTF | |
Retrocopy | FKGRKVTHKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTGPVGRVETGVLKPGMVVTF |
Parental | APVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHP |
APV.VTTEVKSVEMHHEALSEALPGDNVGFN.KNVSVKDVRRGNV.GDSKNDPPMEAA.FTAQVIILNHP | |
Retrocopy | APVSVTTEVKSVEMHHEALSEALPGDNVGFNIKNVSVKDVRRGNVVGDSKNDPPMEAAAFTAQVIILNHP |
Parental | GQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPP |
GQISAGYAPVLDCHTAHIACKFAELKEKID.RSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPP | |
Retrocopy | GQISAGYAPVLDCHTAHIACKFAELKEKIDHRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPP |
Parental | LGRFAVRDMRQTVAVGVIKAVDKKAAGAGKVTKSAQKAQKAK |
LGRFAVRDMRQTVAVGVIKAVDKKAAGAGKVTKSAQKAQKAK | |
Retrocopy | LGRFAVRDMRQTVAVGVIKAVDKKAAGAGKVTKSAQKAQKAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .29 RPM | 1004 .30 RPM |
ERP005899_muscle | 1 .32 RPM | 7335 .41 RPM |
SRP017611_brain | 0 .23 RPM | 631 .15 RPM |
SRP017611_kidney | 0 .83 RPM | 2172 .48 RPM |
SRP017611_liver | 0 .68 RPM | 1473 .77 RPM |
SRP030211_testis | 0 .39 RPM | 1056 .30 RPM |