RetrogeneDB ID: | retro_fcat_1388 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D1:8243318..8244100(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EEF1A1 | ||
Ensembl ID: | ENSFCAG00000030977 | ||
Aliases: | EEF1A1, EF1A | ||
Description: | Elongation factor 1-alpha 1 [Source:UniProtKB/Swiss-Prot;Acc:Q66RN5] |
Percent Identity: | 59.34 % |
Parental protein coverage: | 57.58 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 7 |
Parental | DKRTIEKFEKEAAEMGKGSFKYAWV-LDKLK-AERERGITIDISL-WKFETSKYYVTIIDAPGHR-DFIK |
D.R..EK.EKE..E.GKG..KYA...LDK.K.A.RE.G.TID.SL..KF.TSK.YVT..DA.GHR...I. | |
Retrocopy | DRRSTEKLEKEPPEVGKGTLKYANI<LDKRK<AGREQGTTIDTSL<VKFQTSK*YVTVTDALGHR<T*IR |
Parental | NMITGTSQADCA-VLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEE |
N.ITGTS..DC...L.VAAGV.E.EAG.SKNG.TREHAL....L.VKQLIV...K.DST.PP.SQ.R..E | |
Retrocopy | NTITGTSPTDCT<FLTVAAGVAELEAGVSKNGPTREHALWLARLSVKQLIVAGHKVDSTAPPCSQER*DE |
Parental | IVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWF-KGWKVT-RKDGNASGTTLLEALDCILP |
..K..S..IKK.GY.P...AFV.IS.WNG...L.PSAN..WF...W.VT..KD.NAS..TLL.ALDCILP | |
Retrocopy | VIKQASACIKKTGYQPNAEAFVSISVWNGNSLLGPSANTLWF<QRWRVT<PKDANASEATLLGALDCILP |
Parental | PTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALS |
PT.P...PL.LPLQDVY.I.GIGTVPV...ET.VL.P........VN.TT.V..VEM..E..S | |
Retrocopy | PTCPPGEPLHLPLQDVYEIHGIGTVPV---ETRVLEPSLMAPSVLVNMTTKVNFVEMLFERRS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 1486 .30 RPM |
SRP017611_kidney | 0 .10 RPM | 9381 .03 RPM |
SRP017611_liver | 0 .00 RPM | 6481 .18 RPM |