RetrogeneDB ID: | retro_hsap_989 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 12:44053637..44054901(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000257907 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EEF1A1 | ||
Ensembl ID: | ENSG00000156508 | ||
Aliases: | EEF1A1, CCS-3, CCS3, EE1A1, EEF-1, EEF1A, EF-Tu, EF1A, GRAF-1EF, HNGC:16303, LENG7, PTI1, eEF1A-1 | ||
Description: | eukaryotic translation elongation factor 1 alpha 1 [Source:HGNC Symbol;Acc:3189] |
Percent Identity: | 84.67 % |
Parental protein coverage: | 91.34 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | KFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAD |
K...........SFKYAWVLDKLK.E.E..ITIDISLWKFETSKYY.T.IDAPGHRDFIKNMITGTSQAD | |
Retrocopy | KYKNKKKRLKLPSFKYAWVLDKLKDELEYCITIDISLWKFETSKYYATVIDAPGHRDFIKNMITGTSQAD |
Parental | CAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKK |
CAVLI.AAGVGEFEAGISKNGQT..HALLA..LGVKQLIVGVNKMDSTEP.YSQKRYEEIVKEVSTYIKK | |
Retrocopy | CAVLIFAAGVGEFEAGISKNGQT*KHALLACILGVKQLIVGVNKMDSTEPSYSQKRYEEIVKEVSTYIKK |
Parental | IGYN-PDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLP |
I..N.PDTV.FVPISG.NGDNM.EPSANMPWFKGWK.T..DGNA.G.TLLEAL.CILP.T.PTDKPL.LP | |
Retrocopy | IVHN<PDTVTFVPISGGNGDNMMEPSANMPWFKGWKITHEDGNACGATLLEALECILPSTHPTDKPLHLP |
Parental | LQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKD |
LQD.YKI.GIGTVPVG.VETGVLK.GM.VTFAPVNVTTEVKSVEMHHE.LSEALPGDNV.F.VKNVSVK. | |
Retrocopy | LQDIYKIDGIGTVPVG*VETGVLKNGMAVTFAPVNVTTEVKSVEMHHEVLSEALPGDNVDFDVKNVSVKE |
Parental | VRRGNVAGDSKNDPPMEAAGFTAQ-VIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLE |
V..GNVAGDSKNDPPMEAAGFTAQ.VIILNHPGQISAG.APVLDCH.AHIACKFA.LK.K....SGKKLE | |
Retrocopy | VHHGNVAGDSKNDPPMEAAGFTAQ<VIILNHPGQISAGCAPVLDCHMAHIACKFAKLKKKTGSTSGKKLE |
Parental | DGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKKAAGAGKVTKSAQKA |
DGP.FLKSGDAAIVDMVPGKPMCVESFS.YPPL.RFAV.DMRQTVAVGVI.A.DKKAAGAGKVTKS.QKA | |
Retrocopy | DGPTFLKSGDAAIVDMVPGKPMCVESFSVYPPLSRFAVCDMRQTVAVGVIEAMDKKAAGAGKVTKSTQKA |
Parental | QKAK |
QKAK | |
Retrocopy | QKAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .04 RPM | 5264 .08 RPM |
bodymap2_adrenal | 0 .06 RPM | 4408 .93 RPM |
bodymap2_brain | 0 .02 RPM | 1165 .02 RPM |
bodymap2_breast | 0 .08 RPM | 3630 .18 RPM |
bodymap2_colon | 0 .02 RPM | 6218 .58 RPM |
bodymap2_heart | 0 .00 RPM | 698 .42 RPM |
bodymap2_kidney | 0 .00 RPM | 2811 .08 RPM |
bodymap2_liver | 0 .00 RPM | 1314 .04 RPM |
bodymap2_lung | 0 .00 RPM | 6336 .68 RPM |
bodymap2_lymph_node | 0 .02 RPM | 5735 .42 RPM |
bodymap2_ovary | 0 .10 RPM | 7786 .50 RPM |
bodymap2_prostate | 0 .03 RPM | 8544 .31 RPM |
bodymap2_skeletal_muscle | 0 .04 RPM | 972 .29 RPM |
bodymap2_testis | 0 .00 RPM | 3096 .81 RPM |
bodymap2_thyroid | 0 .02 RPM | 4724 .61 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 9598 .56 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_790 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .04 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .04 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .03 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .03 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .03 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .02 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .03 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .07 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .03 RPM |
TSI_NA20786 | 0 .03 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .05 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .02 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .04 RPM |