RetrogeneDB ID: | retro_itri_1488 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393507.1:702225..702554(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS26 | ||
Ensembl ID: | ENSSTOG00000010559 | ||
Aliases: | None | ||
Description: | ribosomal protein S26 [Source:HGNC Symbol;Acc:10414] |
Percent Identity: | 73.04 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | TKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASV-FDAYVLPKLYVK |
TKKR.NNG..KKG...VQPI....C....PKDKAIKKF.I..I.EAAA.RDIS.ASV.FDAYVLP.LYVK | |
Retrocopy | TKKRGNNGHVKKGCSQVQPI----CYMNLPKDKAIKKFTI*SIIEAAAIRDISKASV<FDAYVLPNLYVK |
Parental | LHYCVSCAIHSKVVRNRSREARKDRTPPPRFRPAGAAPRPPPKPM |
L.Y.VSCAIHSKVVRNRS.EA.KD.TPPP.FR.AGA.P.PPPKPM | |
Retrocopy | LQYFVSCAIHSKVVRNRSHEAWKDPTPPPGFRLAGAVP*PPPKPM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |